Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs79149826 chr17:1418983 C/T 1.37E-5 176 24.7 25.87 13.02 KM Plot
PCPG rs7915976 chr10:50559202 A/G 6.52E-6 178 14.25 30.25 24.62 KM Plot
PCPG rs79166663 chr16:89829430 A/G 0.000192 174 25.87 20.2 36.37 KM Plot
PCPG rs79169015 chr8:53843908 C/T 0.000433 173 24.47 27.27 6.1 KM Plot
PCPG rs79169519 chr7:158848012 C/T 0.000198 175 25.53 20 41.87 KM Plot
PCPG rs79172596 chr2:118713140 T/C 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs7918967 chr10:131973459 T/G 0 178 25.6 24.23 3.17 KM Plot
PCPG rs79197902 chr7:1127045 G/T 1.13E-7 175 25.7 23.57 19.87 KM Plot
PCPG rs7922968 chr10:131966309 C/T 0 178 25.53 24.47 3.17 KM Plot
PCPG rs79230516 chr16:89841167 A/G 0.000181 176 25.87 20.2 36.37 KM Plot
PCPG rs79244293 chr16:89896220 T/C 0.000207 171 25.87 21.5 36.37 KM Plot
PCPG rs79264175 chr8:11513910 C/G 0.000428 177 25.28 25.87 19.93 KM Plot
PCPG rs79277195 chr16:90084895 C/G 1.14E-8 174 25.87 20.2 6.62 KM Plot
PCPG rs79284621 chr16:89907493 G/T 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs793203 chr3:53502396 T/C 0.00026 170 31.43 22.35 25.6 KM Plot